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What does this mean? When I play the map there are no CPs so I can't spawn.

could you post your error log? I need you to help me help you.

Nothing shows up in the munge log. I think something were it's not reading the LVL or something cause no CPs show up when I start.

Sometimes the editor may save maps incorrectly and you may get a corrupted map file when munged.
Try creating a new data folder and copy the important stuff like World and Sides, also your .lua's into the new folder. or you might have to start from scratch. sorry

Looks like we'll have to start from scratch then, I get this with Kashyyyk: Docks Expanded.