I have tried many things. I tried selecting them but they arn't selectable. I tried removing them from the script but adn then raising the terrain above them but they still apear in game. I tried making a entire new terrain with nothing on it, but to my surprise they are magically there when I test my map. Theys mess up how my map i suppose to work. I want... no, need to know how to rid of them!
some one here at GT has to know how. Can you please tell me?

You have to change layers. Go to the "conquest" layer and delete them.

If you read through the getting started documentation and most of the other documentation, you will understand more about how to mod the game, which will in turn make your mods better and easier to do.