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how do u make capital ship shield allow units to pass through?

Search for the msh of the shield and copy any msh.option file from anywhere.
Rename this file to the name of the shield msh and inside delete everything and add -nocolission.

put is in the same folder than the ships'd shield msh and munge.
That should work, I think.

EDIT:
or you could try and put this in your shield's odf: