Well I downloaded physcofreds flyable trooptans. It only came with a msh file called imp_fly_troopertrans_mod.msh. I replaced the imp_fly_protoshuttle.msh in odf with imp_fly_troopertrans_mod.msh and and the other geometry space with it.

Then ingame, I get into it and the wings don't move down so your flying it in landing form...

Any idea whats wrong.

There should be a munged folder be in the download or the transport uses the same anims as the thtea shutlle oes. try to placethe theta shuttle anims in the sides munged folder and munge

No, trooptrans has it's own anims. They exist in the stock assets, so if they didn't come with the msh you downloaded, look for them in the imp side. Incidentally, the msh is in the imp assets as well.